barcoded stats from fastq

wdecoster / NanoPlot

Plotting scripts for long read sequencing data

http://nanoplot.bioinf.be

MIT License

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barcoded stats from fastq #188

Closed aspitaleri closed 4 years ago

aspitaleri commented 4 years ago

Hi, --barcoded does not work using fastq.gz files but only with --summary. Could be possible to feed Nanoplot with a set of fastq.gz and get back a stats from each instead the overall? So far the only way is going one by one in a loop. Best

wdecoster commented 4 years ago

By default NanoPlot and NanoStat is going to merge all datasets you give it, so running it separately is what you would have to do to get a report for each barcode, You can get per-dataset stats in one go using NanoComp, which will not merge all datasets but keep them separate.

aspitaleri commented 4 years ago

okay! perfect. I forgot about NanoComp ... Thanks again

wdecoster commented 4 years ago

Happy to help, let me know if there is anything else.