Closed aspitaleri closed 3 years ago
I have no idea how that looks like, if you can share an example I can have a look.
the output is a tsv like this:
filename read_id run_id channel mux start_time duration template_start template_duration sequence_length_template mean_qscore_template
FAF17394_44855949_94.fast5 0017323b-af02-4832-afdb-3a91ae540b4d 44855949b830beb3a211cf87665ad44976228ba3 147 1 65109.156 31.903 65109.156 31.903 5910 0.0
That looks a lot like a guppy summary file, but I guess you tested already if NanoPlot works with the bonito summary?
actually I didn't yet. I will.
NanoPlot --summary basecalls_summary.tsv.gz -o summary-plots-log --loglength --N50 it worked as a charm!
Good to hear.
Hi still great ever tool! Do you plan to support bonito summary tsv output from basecalling?