modified functions in timeplots.py to use plotly

wdecoster / NanoPlot

Plotting scripts for long read sequencing data

http://nanoplot.bioinf.be

MIT License

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modified functions in timeplots.py to use plotly #232

Closed iliasbukraa closed 3 years ago

iliasbukraa commented 3 years ago

modified the following functions to use plotly instead of seaborn/mathplotlib:

length_over_time
quality_over_time
sequencing_speed_over_time
plot_over_time
cumulative_yields

for the linear regression plot a new dependency is needed however → statsmodels=0.12.2 (to draw the regression line)

iliasbukraa commented 3 years ago

any idea because I have no clue why the import doesn't work...

wdecoster commented 3 years ago

NanoPlot doesn't depend on nanocomp - nanocomp doesn't get installed and is thus not importable. Given the size of the function I would suggest you either copy it to NanoPlot too (and avoid adding a dependency), or alternatively move the function to NanoPlot and import it from nanoplot for nanocomp (as nanocomp already depends on nanoplot for other functions).