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wdecoster / NanoPlot

Plotting scripts for long read sequencing data
http://nanoplot.bioinf.be
MIT License
413 stars 47 forks source link

Conda installation problem #236

Closed kokyriakidis closed 3 years ago

kokyriakidis commented 3 years ago

Hey @wdecoster ,

I have trouble installing you tool through conda. First I tried to install in MacOS (using it inside a snakemake workflow) but it failed. I thought it may be a OS problem. Then I tried to install it on a new python 3.6.10 conda environment in an Ubuntu system. It failed again.

The command I used is:

conda install -c bioconda nanoplot

Do you have any clue about this issue?

wdecoster commented 3 years ago

Hi kokyriakidis,

And what is the error you are getting?

Wouter

kokyriakidis commented 3 years ago

(nanoplot) kokyriakidis@XAROS-WORKSTATION:~$ conda install -c bioconda nanoplot Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.

The pip installation works perfectly!

wdecoster commented 3 years ago

This doesn't look like an issue specific to NanoPlot, but rather something about your conda setup. Please try by installing in a fresh environment using conda create -n nanoplot -c bioconda nanoplot