Traceback (most recent call last):
File "/home/jason/.local/bin/NanoPlot", line 8, in
sys.exit(main())
File "/home/jason/.local/lib/python3.6/site-packages/nanoplot/NanoPlot.py", line 104, in main
plots = make_plots(datadf, settings)
File "/home/jason/.local/lib/python3.6/site-packages/nanoplot/NanoPlot.py", line 168, in make_plots
figformat=settings["format"])
File "/home/jason/.local/lib/python3.6/site-packages/nanoplotter/nanoplotter_main.py", line 464, in length_plots
figformat=figformat))
File "/home/jason/.local/lib/python3.6/site-packages/nanoplotter/nanoplotter_main.py", line 516, in yield_by_minimal_length_plot
fig = px.scatter(x=df.reindex(idx)["lengths"], y=df.reindex(idx)["cumyield_gb"])
TypeError: scatter() missing 1 required positional argument: 'data_frame'
Hello I just install the Nanoplot by
conda install -c bioconda nanoplot
I use NanoPlot for Nanopore .fastq examination. command line as below: NanoPlot -t 40 --fastq Dsph_barcode16.fastq -o Dsph_Nanoplot --loglength
But I got the error message like below:
If you read this then NanoPlot 1.38.0 has crashed :-( Please try updating NanoPlot and see if that helps...
If not, please report this issue at https://github.com/wdecoster/NanoPlot/issues If you could include the log file that would be really helpful. Thanks!
Traceback (most recent call last): File "/home/jason/.local/bin/NanoPlot", line 8, in
sys.exit(main())
File "/home/jason/.local/lib/python3.6/site-packages/nanoplot/NanoPlot.py", line 104, in main
plots = make_plots(datadf, settings)
File "/home/jason/.local/lib/python3.6/site-packages/nanoplot/NanoPlot.py", line 168, in make_plots
figformat=settings["format"])
File "/home/jason/.local/lib/python3.6/site-packages/nanoplotter/nanoplotter_main.py", line 464, in length_plots
figformat=figformat))
File "/home/jason/.local/lib/python3.6/site-packages/nanoplotter/nanoplotter_main.py", line 516, in yield_by_minimal_length_plot
fig = px.scatter(x=df.reindex(idx)["lengths"], y=df.reindex(idx)["cumyield_gb"])
TypeError: scatter() missing 1 required positional argument: 'data_frame'
Here is the logfile: NanoPlot_20210802_1031.log