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wdecoster / NanoPlot

Plotting scripts for long read sequencing data
http://nanoplot.bioinf.be
MIT License
407 stars 48 forks source link

analysis pass only #286

Closed aspitaleri closed 2 years ago

aspitaleri commented 2 years ago

Hi would be possible to add an option to Nanoplot in order to perform statistical analysis on the pass reads only?

wdecoster commented 2 years ago

There already is a --minqual option. By default, the pass reads are those with Q>7, but that is something that users can choose in the guppy parameters.