Closed os103 closed 1 year ago
Can you try upgrading the nanoget module using conda?
I did see an earlier post where someone had a similar problem resolved via upgrading nano get. I tried that last night and it didn’t work. I’ve just tried it again but from within the nano plot virtual environment I’ve created (I don’t know if this will make a difference, I’m a novice with command line). I got the following output after the update but still NanoPlot is giving the same error.
@. ~]$ conda activate nanoplot-venv (nanoplot-venv) @. ~]$ conda upgrade nanoget Collecting package metadata (current_repodata.json): done Solving environment: done
environment location: /home/o/os103/miniconda3/envs/nanoplot-venv
added / updated specs:
The following packages will be downloaded:
package | build
---------------------------|-----------------
nss-3.77 | h2350873_0 2.1 MB conda-forge
------------------------------------------------------------
Total: 2.1 MB
The following packages will be UPDATED:
nss 3.76-h2350873_0 --> 3.77-h2350873_0
Proceed ([y]/n)? y
Downloading and Extracting Packages nss-3.77 | 2.1 MB | ##################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done (nanoplot-venv) @.*** fastq_reads]$ NanoPlot --fastq 12-sample-no-bead-1-cat.fastq
If you read this then NanoPlot 1.39.0 has crashed :-( Please try updating NanoPlot and see if that helps...
If not, please report this issue at https://github.com/wdecoster/NanoPlot/issues If you could include the log file that would be really helpful. Thanks!
Traceback (most recent call last):
File "/home/o/os103/miniconda3/envs/nanoplot-venv/bin/NanoPlot", line 10, in
On 31 Mar 2022, at 21:36, Wouter De Coster @.**@.>> wrote:
Can you try upgrading the nanoget module using conda?
— Reply to this email directly, view it on GitHubhttps://github.com/wdecoster/NanoPlot/issues/291#issuecomment-1085079201, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AO6FJMLPBOAXN3DATNS7SADVCYEEJANCNFSM5SGAWGAA. You are receiving this because you authored the thread.Message ID: @.***>
Hmm, remarkable. Could it be that there is an older nanoget module that somehow gets precedence?
You could try python -c "import nanoget ; print(nanoget.__version__)"
and see if that matches with what you recently installed.
Maybe pip uninstall nanoget
will remove an older installation.
Hi,
I get the following error message when running nano plot. I installed via conda and have tried 'conda upgrade NanoPlot'.
Thanks! Orie