search

wdecoster / NanoPlot

Plotting scripts for long read sequencing data
http://nanoplot.bioinf.be
MIT License
407 stars 48 forks source link

PermissionError: [Errno 13] Permission denied #302

Open nbargues opened 2 years ago

nbargues commented 2 years ago

Hello, I have the following issue :

If you read this then NanoPlot 1.40.0 has crashed :-( Please try updating NanoPlot and see if that helps...

If not, please report this issue at https://github.com/wdecoster/NanoPlot/issues If you could include the log file that would be really helpful. Thanks!

Traceback (most recent call last): File "/opt/miniconda3/bin/NanoPlot", line 8, in sys.exit(main()) File "/opt/miniconda3/lib/python3.8/site-packages/nanoplot/NanoPlot.py", line 59, in main datadf = get_input( File "/opt/miniconda3/lib/python3.8/site-packages/nanoget/nanoget.py", line 86, in get_input with cfutures.ProcessPoolExecutor(max_workers=filethreads) as executor: File "/opt/miniconda3/lib/python3.8/concurrent/futures/process.py", line 555, in init self._call_queue = _SafeQueue( File "/opt/miniconda3/lib/python3.8/concurrent/futures/process.py", line 165, in init super().init(max_size, ctx=ctx) File "/opt/miniconda3/lib/python3.8/multiprocessing/queues.py", line 42, in init self._rlock = ctx.Lock() File "/opt/miniconda3/lib/python3.8/multiprocessing/context.py", line 68, in Lock return Lock(ctx=self.get_context()) File "/opt/miniconda3/lib/python3.8/multiprocessing/synchronize.py", line 162, in init SemLock.init(self, SEMAPHORE, 1, 1, ctx=ctx) File "/opt/miniconda3/lib/python3.8/multiprocessing/synchronize.py", line 57, in init sl = self._semlock = _multiprocessing.SemLock( PermissionError: [Errno 13] Permission denied

I've seen the issue #296 but it's not a problem of chmod from kaleido for me.

Do you have an idea why I have this issue ? Thanks