wdecoster
commented
2 months ago Thank you! I will look into those warnings :-)
Open DenisFilloux opened 2 months ago
wdecoster
commented
2 months ago Thank you! I will look into those warnings :-)
Hello Wouter,
For your information...
#################################################################### dfilloux@clust-slurm-client2:~/work$ module load nanoplot/1.42.0
dfilloux@clust-slurm-client2:~/work$ cat test.fastq @49cd4c40-7e45-445e-91ee-ab6fd618bd14 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=18817 ch=82 start_time=2024-09-17T04:21:00Z model_version_id=dna_r10.4.1_e8.2_5khz_400bps_sup@v4.2.0 barcode=unclassified TTATGTCTCATTACTTTTAACATTCGTCATATGTTCATTAAAG + ()((++('%$$%$$$$%'&&&&&%$&$$$')(('%$%&%%%% @6ddb0fa7-9fa9-4982-b551-0caf859b8282 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=15149 ch=89 start_time=2024-09-17T04:11:28Z model_version_id=dna_r10.4.1_e8.2_5khz_400bps_sup@v4.2.0 barcode=unclassified TCGCCGATTAGAAGCTGAGAAGTACCGCTAGGCGGGGCCGAATAGGGA + ))))))(((+++,.1((((----++),)),))''+++/,)(''(- @c0c916e4-30db-4b63-9582-8cefa174c4d5 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=17418 ch=106 start_time=2024-09-17T04:07:46Z model_version_id=dna_r10.4.1_e8.2_5khz_400bps_sup@v4.2.0 barcode=unclassified ATATGTACTTTACTTCGTTCGATTACATATGCTCTT +
$$%&$$$%'%&&%%''(&%%%&)-/2//+('''&
@9e23ef97-79e6-4509-8017-008bf4e98380 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=38011 ch=38 start_time=2024-09-17T04:09:28Z model_version_id=dna_r10.4.1_e8.2_5khz_400bps_sup@v4.2.0 barcode=unclassified CTACAACTTTTCTTTTTCACCTTTTGCATGTAGAGGGTGTATT + %&&%&''(((''+)))))-32254320001455565563211 @d5bbedce-a5c6-462e-b57b-58eee34f0633 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=18814 ch=108 start_time=2024-09-17T04:24:02Z model_version_id=dna_r10.4.1_e8.2_5khz_400bps_sup@v4.2.0 barcode=unclassified ACAAGAAAGAGTTCTTAACTCTAAAGATAAAGATCTTCAAGATCAAAACTAAGCGATA + ))'&&&--03334432111356876545568:9987--88867789<<:5'&&&('%
dfilloux@clust-slurm-client2:~/work$ NanoPlot --fastq_rich test.fastq -o Test /shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/spatial_heatmap.py:76: FutureWarning:
pandas.value_counts is deprecated and will be removed in a future version. Use pd.Series(obj).value_counts() instead.
/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/timeplots.py:257: FutureWarning:
'T' is deprecated and will be removed in a future version, please use 'min' instead.
/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/timeplots.py:277: FutureWarning:
'T' is deprecated and will be removed in a future version, please use 'min' instead.
/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/timeplots.py:208: FutureWarning:
'T' is deprecated and will be removed in a future version, please use 'min' instead.
/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/timeplots.py:231: FutureWarning:
'T' is deprecated and will be removed in a future version, please use 'min' instead.