search

wdecoster / chopper

MIT License
135 stars 11 forks source link

Issue in Installation #21

Closed SelfShubham closed 7 months ago

SelfShubham commented 8 months ago

Installing via conda using command conda install -c bioconda chopper

Error Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

wdecoster commented 8 months ago

Could you please try again, but create a separate environment?

conda create -n chopper_env chopper

SelfShubham commented 8 months ago

with above suggested command. I am getting following error

PackagesNotFoundError: The following packages are not available from current channels:

SelfShubham commented 8 months ago

If I first create an environment than try to install using conda (conda install -c bioconda chopper). I am getting same error

Error Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

wdecoster commented 8 months ago

Is your conda installation recent? Are you using mamba?

Or could you just download the binary from the releases?

SelfShubham commented 8 months ago

using conda but installation is not recent. will try with binary file. Thank you

incoherentian commented 8 months ago

Is your conda installation recent? Are you using mamba?

Just throwing out there that I find mamba to solve more problems than it causes, and wouldn't usually suspect mamba :)

My chopper env and others are all created with 3y/o mamba and working fine!

Binary working though @SelfShubham ?

wdecoster commented 8 months ago

Oh yes I would indeed recommend using mamba rather than the normal conda.