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wdecoster / chopper

MIT License
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chopper with bam files #27

Closed selmapichot closed 4 months ago

selmapichot commented 5 months ago

Hi, Is there a way I could use chopper with bam files ? This is to remove the reads corresponding to the DCS (DNA control sample). Many thanks

wdecoster commented 5 months ago

You could use samtools fastq and pipe the output into chopper.