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wdecoster / cramino

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
MIT License
124 stars 11 forks source link

Multiple file inputs #27

Closed Shians closed 5 months ago

Shians commented 5 months ago

It would be useful to be able to put in multiple files as inputs and iterate through them to populate the table.

wdecoster commented 5 months ago

Do you mean you want to combine the multiple files into one report, as if they were one file? You could probably do that with samtools cat and pipe the output into cramino, as cramino can read from stdin.

Shians commented 5 months ago

I mean the stats would be reported for each file as additional columns in the output. Just so all the results can live in a single file without additional manipulation.

wdecoster commented 5 months ago

Ah. No, that is not something that I plan to implement. I would suggest writing a (python or other) script to gather multiple cramino files.