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wdecoster / nanoQC

Quality control tools for nanopore sequencing data
GNU General Public License v3.0
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BokehDeprecationWarnings with Bokeh v 2.02 #13

Closed unique379r closed 4 years ago

unique379r commented 4 years ago

Hi I am using nanoQC ( https://github.com/wdecoster/nanoQC) which uses Bokeh to plot the analysis of long-read reads but while using I am getting errors "BokehDeprecationWarning: 'legend' keyword is deprecated, use explicit 'legend_label', 'legend_field', or 'legend_group' keywords instead". Any possible solution or update on it? Someone from the previous version has reported (PatrikHlobil/Pandas-Bokeh#51) and it seems you have fixed it but this is actually not the case of latest release.

Please have a look. Thanks

wdecoster commented 4 years ago

Thanks for reporting this. Those are not errors, but warnings, NanoQC should just work, even when raising warnings. It would be good to fix these warnings of course, and I'll have a look after my holidays.

Someone from the previous version has reported (PatrikHlobil/Pandas-Bokeh#51) and it seems you have fixed it but this is actually not the case of latest release.

NanoQC is unrelated to PatrikHlobil/Pandas-Bokeh.

Please have a look.

I would suggest "Could you please have a look?" as you are not the one who decides what's on my to-do list. Thanks

wdecoster commented 4 years ago

The necessary changes have been made in nanoQC v0.9.4.