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wdecoster / nanocomp

Comparison of multiple long read datasets
MIT License
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NanoComp fails with ValueError #34

Closed utrivedi closed 3 years ago

utrivedi commented 3 years ago

Hello, While trying to run the latest version of NanoComp on a pair of fastq files it fails which following error: "ValueError: Transform failed with error code 1: Failed to serialize document: Uncaught" My Command is: NanoComp --fastq SRR7447108_Av_JG3.fastq.gz SRR7449790_Av_CIP.fastq.gz --names Av_JG3 Av_CIP Please could you help to resolve this? Many thanks, Urmi

wdecoster commented 3 years ago

Thanks for reporting this, this is similar to https://github.com/wdecoster/NanoPlot/issues/207

Is it possible that you don't have an internet connection where you are running NanoComp?

This is something I hope to fix soon, in the meantime you can downgrade this by installing NanoPlot==1.32.1. My apologies for the inconvenience.

utrivedi commented 3 years ago

Thank you for your prompt response. Yes, the job was running on a cluster node which didn't have internet access. Downgrading the version helped. Thanks again.

wdecoster commented 3 years ago

I will make time to fix it tomorrow.

wdecoster commented 3 years ago

This issue should be resolved in NanoPlot v1.33.1, which is now available on PyPI. Please let me know if you encounter further errors.

Regards, Wouter