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wdecoster / nanocomp

Comparison of multiple long read datasets
MIT License
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NanoComp: error: unrecognized arguments: --names #46

Closed arz19893 closed 3 years ago

arz19893 commented 3 years ago

Hi I am trying to use nanocomp for comparison pre post filter , I keep getting this error ):

NanoComp --fastq 1149_AV_CIP.fastq.gz 1149_AV_CIP_trimmed.fastq.gz --names Av_CIP Av_CIP_trim -o Av_Nanocomp

wdecoster commented 3 years ago

Thanks for reporting this. Could you let me know how you installed NanoComp and which version you currently have?

arz19893 commented 3 years ago

Thanks for reporting this. Could you let me know how you installed NanoComp and which version you currently have? Thank you for quick response

The version is NanoComp 1.15.0 pip install NanoComp

wdecoster commented 3 years ago

Highly remarkable. It should work like that... also the testing code works with --names. Are you copy-pasting this command from somewhere? Can you try just typing it to make sure there are no invisible characters?