Use .txt file of filepaths to multiple fastq files as input

wdecoster / nanocomp

Comparison of multiple long read datasets

MIT License

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Use .txt file of filepaths to multiple fastq files as input #51

Closed ew367 closed 2 years ago

ew367 commented 2 years ago

I would like to compare multiple runs (~12) and was wondering if there was any way to use a text file (or similar) containing file paths for the individual fastq files as input (and for the --names arg) to nanoComp, rather than having to type them all out individually?

Thanks

wdecoster commented 2 years ago

Hi,

At the moment that is not possible, but I agree that would make sense. I won't be able to make a promise when I would have the time to implement that though.

Wouter

ew367 commented 2 years ago

No worries and thanks for getting back to me :)