wdecoster / nanocomp

Comparison of multiple long read datasets
MIT License
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Static png files not created #61

Open lvann opened 1 year ago

lvann commented 1 year ago

Hello, I am running into an issue (also described here for NanoPlot: https://github.com/wdecoster/NanoPlot/issues/304) where the static .png files are not created by NanoComp unless I am running on a server with access to the internet. Below is an example of the error message:

2022-11-04 10:01:29,456 NanoComp: Creating barplots for number of reads and total throughput.
2022-11-04 10:01:59,757 No static plots are saved due to some kaleido problem:
2022-11-04 10:01:59,757 Transform failed with error code 1: Failed to serialize document: Uncaught

The same input NanoComp command, run in the same conda environment, just with access to internet, runs to completion without error. Is there a workaround to run NanoComp and to produce the static .png files without needing access to the internet?

Thank you!