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wdecoster / nanocomp

Comparison of multiple long read datasets
MIT License
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No static plots are saved due to some kaleido problem #71

Closed prasundutta87 closed 4 weeks ago

prasundutta87 commented 1 year ago

Hi, It seems that NanoComp 1.22.0 is having this problem-

2023-07-07 13:53:55,634 Using sequenced read lengths for plotting.
2023-07-07 13:54:55,236 NanoComp: Creating barplots for number of reads and total throughput.
2023-07-07 13:57:07,314 No static plots are saved due to some kaleido problem:
2023-07-07 13:57:07,314 Transform failed with error code 1: Failed to serialize document: Uncaught
2023-07-07 13:59:17,288 No static plots are saved due to some kaleido problem:
2023-07-07 13:59:17,288 Transform failed with error code 1: Failed to serialize document: Uncaught
2023-07-07 14:01:25,270 No static plots are saved due to some kaleido problem:
2023-07-07 14:01:25,271 Transform failed with error code 1: Failed to serialize document: Uncaught
2023-07-07 14:01:25,293 NanoComp: Creating box plot for lengths.
2023-07-07 14:03:33,164 No static plots are saved due to some kaleido problem:
2023-07-07 14:03:33,164 Transform failed with error code 1: Failed to serialize document: Uncaught
2023-07-07 14:03:33,167 NanoComp: Creating box plot for log length.
2023-07-07 14:05:41,195 No static plots are saved due to some kaleido problem:
2023-07-07 14:05:41,195 Transform failed with error code 1: Failed to serialize document: Uncaught
2023-07-07 14:05:41,196 NanoComp: Creating box plot for quals.
2023-07-07 14:07:49,244 No static plots are saved due to some kaleido problem:
2023-07-07 14:07:49,245 Transform failed with error code 1: Failed to serialize document: Uncaught
2023-07-07 14:09:56,946 No static plots are saved due to some kaleido problem:
2023-07-07 14:09:56,948 Transform failed with error code 1: Failed to serialize document: Uncaught

I saw this error in another post- https://github.com/wdecoster/NanoPlot/issues/266

I am working on a Linux based cluster, so I don't think there seems to be any internet problems.

Regards, Prasun

wdecoster commented 1 year ago

But it did still generate the HTML files, right?

prasundutta87 commented 1 year ago

Yes, that's correct, Wouter.

gabee-chan commented 1 year ago

Hi!

I'm having the same issue (I get html files but not svg due to not having internet connection on HPC). How can I solve this?

Cheers!

wdecoster commented 1 year ago

I am not aware of a way to solve this, unfortunately, without internet access.