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weberlab-hhu / Helixer

Using Deep Learning to predict gene annotations
GNU General Public License v3.0
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Does Helixer produce multiple isoforms? #114

Closed Laura-CE-Campbell closed 5 months ago

Laura-CE-Campbell commented 5 months ago

Hello,

Thank you for providing this software.

I have produced some annotations using Helixer - I am now trying to process them using the KinFin pipeline described here: https://kinfin.readme.io/docs/starting-from-protein-files.

I am at the stage "Filter out non-longest isoforms" - when I run this I am getting the result that 100% of the predicted genes are the longest isoform - I wanted to check if it is the case that Helixer only provides the longest isoform? Or if something has gone wrong here?

Thank you and best wishes,

Laura

arslan9732 commented 5 months ago

Helixer does not give multiple isoforms, it only produces one transcript for one gene.

Laura-CE-Campbell commented 5 months ago

Good to know - thank you!