KeyError: 'Unable to open object (component not found)'

[ply2022]

Hi,

I received following error message when I was running Helixer via Singularity:

Traceback (most recent call last): File "/usr/local/bin/Helixer.py", line 248, in main() File "/usr/local/bin/Helixer.py", line 228, in main model.run() File "/usr/local/lib/python3.8/dist-packages/helixer/prediction/HelixerModel.py", line 937, in run self.open_data_files() File "/usr/local/lib/python3.8/dist-packages/helixer/prediction/HelixerModel.py", line 797, in open_data_files self.shape_test = self.h5_tests[0]['/data/X'].shape File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "/usr/local/lib/python3.8/dist-packages/h5py/_hl/group.py", line 357, in getitem oid = h5o.open(self.id, self._e(name), lapl=self._lapl) File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "h5py/h5o.pyx", line 190, in h5py.h5o.open KeyError: 'Unable to open object (component not found)'

Can you help me with this issue? Thanks.

[soi]

Hello @ply2022,

Please provide more information like the exact command you used and the goal you tried to achieve.

All the best, Felix

[ply2022]

Hi Felix, thanks for the prompt reply. I realized there was an issue downloading test genome. It is running as expected now. I am closing the issue.