Name the genes in order

weberlab-hhu / Helixer

Using Deep Learning to predict gene annotations

GNU General Public License v3.0

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Name the genes in order #117

Closed yangfangyuan0102 closed 3 months ago

yangfangyuan0102 commented 4 months ago

Hi, Dear author, Is it possible to name genes sequentially, without distinguishing the forward and reverse direction. It will facilitate subsequent use.

Best, Fang

alisandra commented 3 months ago

Hi Fang,

Thanks for the suggestion! We'll keep it in mind the next time we're adjusting the relevant part of the code; but for a more expedient solution I can only suggest renaming the genes. There's a lot of tools for manipulating gff3 files out there, including python libraries that allow for customized adjustments.

Ali