issues
search
weberlab-hhu
/
Helixer
Using Deep Learning to predict gene annotations
GNU General Public License v3.0
140
stars
20
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Test GELU activation
#35
soi
closed
3 years ago
1
why does coverage still have -1s?
#34
alisandra
closed
2 years ago
1
revive & test coverage as input
#33
alisandra
opened
3 years ago
0
Try reducing the learning rate again at some point
#32
soi
opened
3 years ago
1
Test AdaBelief
#31
soi
closed
3 years ago
0
Test using zarr as data format
#30
soi
closed
3 years ago
0
Cleanup HelixerModel code
#29
soi
closed
3 years ago
0
Investigate false data on work pc
#28
soi
closed
3 years ago
1
Switch dataset code from keras sequence to tf.data
#27
soi
closed
3 years ago
2
Move overlapping to seperate post-processing script
#26
soi
closed
3 years ago
0
Check if last fully connected layer makes sense
#25
soi
closed
3 years ago
0
Test switching from keras sequences to tf.data
#24
soi
closed
3 years ago
2
Profile learning code
#23
soi
closed
3 years ago
0
Benchmark gpu uplink
#22
soi
closed
3 years ago
1
Run simpler version of DanQ hyperopt
#21
soi
closed
3 years ago
0
Test effect of batch size
#20
soi
closed
3 years ago
0
Go through results of DanQ arch hyperopt
#19
soi
closed
3 years ago
1
Setup experiment backup again
#18
soi
closed
3 years ago
0
Test DanQ with two-stream CNN
#17
soi
closed
3 years ago
0
Figure out way to visualize post-processing results
#16
soi
closed
2 years ago
1
Make first rough post processing prototype
#15
soi
closed
3 years ago
0
Load genomes from one geenuff database each
#14
soi
closed
3 years ago
0
Bump tensorflow-gpu from 1.15.2 to 1.15.4
#13
dependabot[bot]
closed
3 years ago
1
Don't export non-coding genes to h5
#12
alisandra
closed
1 year ago
1
Possibility to Export Unannotated sequences
#11
alisandra
closed
2 years ago
0
Data read efficiency
#10
alisandra
closed
1 year ago
0
Evaluate data augmentation that switches strands
#9
alisandra
opened
3 years ago
0
Add test for data augmentation that switches strands
#8
alisandra
opened
3 years ago
0
Add data augmentation that switches strands
#7
alisandra
opened
3 years ago
0
Evaluate double stranded data models
#6
alisandra
opened
3 years ago
0
Write test for double stranded data generation
#5
alisandra
opened
3 years ago
0
Somtimes predicted categories don't sum to one (overlap + ensembled)
#4
alisandra
closed
3 years ago
0
Mod validation set gen to be closer to generalization goal
#3
alisandra
closed
2 years ago
0
Bump tensorflow-gpu from 1.15.0 to 1.15.2
#2
dependabot[bot]
closed
3 years ago
1
Bump tensorflow-gpu from 1.14.0 to 1.15.2
#1
dependabot[bot]
closed
4 years ago
0
Previous