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webyrd / mediKanren

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
MIT License
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Support queries to find all proteins that interact with a given protein #14

Open webyrd opened 6 years ago

webyrd commented 6 years ago

For example, find all human proteins that are known to interact with a given human protein.

(Feature request from a clinical researcher.)

webyrd commented 6 years ago

The Human Protein Reference Database seems to be one useful source of this information:

http://hprd.org/index_html

Update: Andrew Su points out that HPRD hasn't been updated since 2010.

webyrd commented 6 years ago

List of protein-protein interaction data sources:

http://mips.helmholtz-muenchen.de/proj/ppi/

webyrd commented 6 years ago

Andrew Su recommends this data source for PPI:

https://thebiogrid.org/

which is part of NCATS Data Translator.