Use GEO chipseq data to infer gene-gene regulatory relationships

webyrd / mediKanren

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

MIT License

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Open mattmight opened 6 years ago

mattmight commented 6 years ago

Example query: Given a transcription factor, what genes does it upregulate/downregulate?

Add a parameter: how proximate / distal (+/- 5kb upstream)?

[Added by SME expert at May hackathon.]