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webyrd / mediKanren

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
MIT License
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add use-cases folder #50

Closed kimthi1011 closed 3 years ago

kimthi1011 commented 3 years ago

added the use-cases folder to demonstrate how I use mediKanren for real clinical cases.

In the case PMI-20-10, we used mediKanren to find drugs to perturb one gene/one pathway (IL1R). In the CHAMP1 case, we used mediKanren to find drugs for patient-derived transcriptomic (RNAseq) data.

gregr commented 3 years ago

Nice examples.