weecology / LDATS

Latent Dirichlet Allocation coupled with Bayesian Time Series analyses
https://weecology.github.io/LDATS
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v0.0.8 complete analytical pipeline #66

Closed juniperlsimonis closed 5 years ago

juniperlsimonis commented 5 years ago

finishing the analytical pipeline functions, which involve adding TS_select (akin to LDA_select) and then integrating LDA_TS back into the code and updating it to incorporate the new data structures and function names. also now including an LDA_TS class definition for methods (defined printing already). added a few print and package functions for the pipeline and developed a better general message format for the console during running (reporting steps in the LDA component, clearing out progress bars on completion, as well). adding document_weights back in and defaulting the weighting, but allowing for simple overwrite of it to NULL if desired.

all of the added functions have basic starting point documentation, which can be fleshed out, and all the added functions still need to include testing.

addresses #65 #64