Reads vs. proportions

[bleds22e]

We should figure out if we want to keep the data in just number of reads or proportions of reads. If we choose proportions, we will need to figure out some what to house the original read numbers.

[skmorgane]

Let's use reads because it preserves info on the quality of the run. We will need to create a function that turns those reads into proportions, however, for analyses.