Closed bw4sz closed 4 years ago
Trying to make a example
srun --mem 10GB -p gpu --gpus=1 --time 2:00:00 --pty -u bash -i
export SLURM_TMPDIR=/orange/idtrees-collab/tmp/
export TMPDIR=/orange/idtrees-collab/tmp/
module load tensorflow/1.14.0
export PATH=${PATH}:/home/b.weinstein/miniconda3/envs/crowns/bin/
export PYTHONPATH=${PYTHONPATH}:/home/b.weinstein/miniconda3/envs/crowns/lib/python3.7/site-packages/
export LD_LIBRARY_PATH=/home/b.weinstein/miniconda3/envs/crowns/lib/:${LD_LIBRARY_PATH}
cd /home/b.weinstein/NEON_crown_maps/
python
from main import *
from utils.tfrecords import create_tfrecords
from PIL import image
create_tfrecords('/orange/ewhite/NeonData/SRER/DP3.30010.001/2019/FullSite/D14/2019_SRER_3/L3/Camera/Mosaic/2019_SRER_3_521000_3521000_image.tif', patch_size=400, patch_overlap=0.05, savedir="/orange/idtrees-collab/crops/tfrecords/",overwrite=True)
run_rgb(['/orange/idtrees-collab/crops/tfrecords/2019_SRER_3_521000_3521000_image.tfrecord'], ['/orange/ewhite/NeonData/SRER/DP3.30010.001/2019/FullSite/D14/2019_SRER_3/L3/Camera/Mosaic/2019_SRER_3_521000_3521000_image.tif'])
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/b.weinstein/NEON_crown_maps/main.py", line 144, in run_rgb
shps = predict.predict_tiles(model, records, patch_size=400, rgb_paths=rgb_paths, save_dir=save_dir, batch_size=model.config["batch_size"],overwrite=overwrite)
File "/home/b.weinstein/NEON_crown_maps/predict.py", line 67, in predict_tiles
boxes = predict_tile(model=model, tfrecord=tfrecord, patch_size=patch_size, batch_size=batch_size, score_threshold=score_threshold, max_detections=max_detections, classes=classes)
File "/home/b.weinstein/NEON_crown_maps/predict.py", line 140, in predict_tile
box_array, score_array, label_array = model.prediction_model.predict_on_batch(iterator)
File "/apps/tensorflow/1.14.0.cuda10.gpu/lib/python3.7/site-packages/keras/engine/training.py", line 1580, in predict_on_batch
outputs = self.predict_function(ins)
File "/apps/tensorflow/1.14.0.cuda10.gpu/lib/python3.7/site-packages/tensorflow/python/keras/backend.py", line 3292, in __call__
run_metadata=self.run_metadata)
File "/apps/tensorflow/1.14.0.cuda10.gpu/lib/python3.7/site-packages/tensorflow/python/client/session.py", line 1458, in __call__
run_metadata_ptr)
tensorflow.python.framework.errors_impl.NotFoundError: 2 root error(s) found.
(0) Not found: /orange/idtrees-collab/crops/tfrecords/2019_SRER_3_521000_3521000_image_495.png; No such file or directory
[[{{node ReadFile}}]]
[[IteratorGetNext]]
[[filtered_detections/map/while/TensorArrayWrite_2/TensorArrayWriteV3/_1899]]
(1) Not found: /orange/idtrees-collab/crops/tfrecords/2019_SRER_3_521000_3521000_image_495.png; No such file or directory
[[{{node ReadFile}}]]
[[IteratorGetNext]]
0 successful operations.
chase down this error before debugging at scale.