Error when running app

[henrykironde]

Registered S3 method overwritten by 'quantmod': method from as.zoo.data.frame zoo

processing file: models.Rmd output file: models.knit.md

Output created: models.html

Warning: Error in [.data.frame: undefined columns selected 172: stop 171: [.data.frame 169: plot_cast_ts 168: renderPlot [/home/portal-forecast-web/portal-forecast-web/app.R#77] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$main_plot 1: runApp Warning: Error in Summary.factor: ‘max’ not meaningful for factors 172: stop 171: Summary.factor 169: plot_cast_point 168: renderPlot [/home/portal-forecast-web/portal-forecast-web/app.R#88] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$species_summary_plot 1: runApp

[juniperlsimonis]

what environment / with what settings / sessionInfo are you running this in? can you create a github action or something similar that mimics what you're reporting here?

[henrykironde]

GitHub actions: Yes I think we need one. Let me get back to you later.

[henrykironde]

I have updated to R version 4.1.3 (2022-03-10) Platform: x86_64-pc-linux-gnu but still getting same error

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] portalcasting_0.35.0

loaded via a namespace (and not attached):
 [1] zoo_1.8-10         tidyselect_1.1.2   xfun_0.30          purrr_0.3.4       
 [5] urca_1.3-0         lattice_0.20-45    colorspace_2.0-3   vctrs_0.4.1       
 [9] generics_0.1.2     viridisLite_0.4.0  yaml_2.3.5         utf8_1.2.2        
[13] rlang_1.0.2        pillar_1.7.0       tscount_1.4.3      glue_1.6.2        
[17] forecast_8.16      TTR_0.24.3         lifecycle_1.0.1    quantmod_0.4.18   
[21] timeDate_3043.102  munsell_0.5.0      gtable_0.3.0       coda_0.19-4       
[25] knitr_1.38         tseries_0.10-50    lmtest_0.9-40      parallel_4.1.3    
[29] curl_4.3.2         fansi_1.0.3        xts_0.12.1         Rcpp_1.0.8.3      
[33] scales_1.2.0       jsonlite_1.8.0     fracdiff_1.5-1     gridExtra_2.3     
[37] ggplot2_3.3.5      dplyr_1.0.8        runjags_2.2.1-7    portalr_0.3.9     
[41] grid_4.1.3         quadprog_1.5-8     cli_3.2.0          tools_4.1.3       
[45] magrittr_2.0.3     ltsa_1.4.6         tibble_3.1.6       scoringRules_1.0.1
[49] crayon_1.5.1       pkgconfig_2.0.3    ellipsis_0.3.2     MASS_7.3-56       
[53] lubridate_1.8.0    httr_1.4.2         viridis_0.6.2      R6_2.5.1          
[57] nnet_7.3-17        nlme_3.1-157       compiler_4.1.3    
> 

[henrykironde]

I will create a GitHub actions

[juniperlsimonis]

It's also quite possible that you're running with an out-of-date local instance of the portalcasting directory, since there is not a call to setup or such. I just created a new local instance of everything (new clone of the repo) and ran portalcasting::setup_production() and then shiny::runApp() and it works for me

[henrykironde]

Let me try that.

[henrykironde]

It looks like that was the error. I will add it to the update script, to always setup_production