When I install git+https://github.com/lucasb-eyer/pydensecrf.git, I have trouble with cython , so I found that I must downgrade to cython==0.29.36 and then install pydensecrf that okay but when i install OpenAI Clip I get likely the same error.
/tmp/pip-build-env-k7kqvt3l/overlay/lib/python3.8/site-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-install-ktjymnfq/pydensecrf_a587772943f6421480fe6eb089f3a216/pydensecrf/densecrf.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
Error compiling Cython file:
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...
from eigen cimport *
^
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pydensecrf/densecrf.pxd:1:0: 'eigen.pxd' not found
Error compiling Cython file:
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...
cdef cppclass PottsCompatibility(LabelCompatibility):
PottsCompatibility(float) except +
cdef cppclass DiagonalCompatibility(LabelCompatibility):
DiagonalCompatibility(const c_VectorXf&) except +
^
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pydensecrf/densecrf.pxd:12:36: 'c_VectorXf' is not a type identifier
Error compiling Cython file:
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...
cdef cppclass DiagonalCompatibility(LabelCompatibility):
DiagonalCompatibility(const c_VectorXf&) except +
cdef cppclass MatrixCompatibility(LabelCompatibility):
MatrixCompatibility(const c_MatrixXf&) except +
^
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pydensecrf/densecrf.pxd:15:34: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
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...
cdef extern from "densecrf/include/unary.h":
cdef cppclass UnaryEnergy:
pass
cdef cppclass ConstUnaryEnergy(UnaryEnergy):
ConstUnaryEnergy(const c_MatrixXf& unary) except +
^
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pydensecrf/densecrf.pxd:23:31: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef cppclass ConstUnaryEnergy(UnaryEnergy):
ConstUnaryEnergy(const c_MatrixXf& unary) except +
cdef cppclass LogisticUnaryEnergy(UnaryEnergy):
LogisticUnaryEnergy(const c_MatrixXf& L, const c_MatrixXf& feature) except +
^
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pydensecrf/densecrf.pxd:26:34: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef cppclass ConstUnaryEnergy(UnaryEnergy):
ConstUnaryEnergy(const c_MatrixXf& unary) except +
cdef cppclass LogisticUnaryEnergy(UnaryEnergy):
LogisticUnaryEnergy(const c_MatrixXf& L, const c_MatrixXf& feature) except +
^
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pydensecrf/densecrf.pxd:26:55: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
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...
c_DenseCRF(int N, int M) except +
# Setup methods.
# TODO
#void addPairwiseEnergy(PairwisePotential *potential)
void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType)
^
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pydensecrf/densecrf.pxd:54:37: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
# Setup methods.
# TODO
#void addPairwiseEnergy(PairwisePotential *potential)
void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType)
void setUnaryEnergy(UnaryEnergy *unary)
void setUnaryEnergy(const c_MatrixXf &unary)
^
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pydensecrf/densecrf.pxd:56:34: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
# TODO
#void addPairwiseEnergy(PairwisePotential *potential)
void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType)
void setUnaryEnergy(UnaryEnergy *unary)
void setUnaryEnergy(const c_MatrixXf &unary)
void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature)
^
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pydensecrf/densecrf.pxd:57:34: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
# TODO
#void addPairwiseEnergy(PairwisePotential *potential)
void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType)
void setUnaryEnergy(UnaryEnergy *unary)
void setUnaryEnergy(const c_MatrixXf &unary)
void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature)
^
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pydensecrf/densecrf.pxd:57:55: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
void setUnaryEnergy(UnaryEnergy *unary)
void setUnaryEnergy(const c_MatrixXf &unary)
void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature)
# Inference methods.
c_MatrixXf inference(int n_iterations)
^
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pydensecrf/densecrf.pxd:60:8: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
c_MatrixXf inference(int n_iterations)
# TODO: Not enabled because it would require wrapping VectorXs (note the `s`)
#c_VectorXs map(int n_iterations)
# Step-by-step inference methods.
c_MatrixXf startInference() const
^
------------------------------------------------------------
pydensecrf/densecrf.pxd:65:8: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
# TODO: Not enabled because it would require wrapping VectorXs (note the `s`)
#c_VectorXs map(int n_iterations)
# Step-by-step inference methods.
c_MatrixXf startInference() const
void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const
^
------------------------------------------------------------
pydensecrf/densecrf.pxd:66:27: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
# TODO: Not enabled because it would require wrapping VectorXs (note the `s`)
#c_VectorXs map(int n_iterations)
# Step-by-step inference methods.
c_MatrixXf startInference() const
void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const
^
------------------------------------------------------------
pydensecrf/densecrf.pxd:66:42: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
# TODO: Not enabled because it would require wrapping VectorXs (note the `s`)
#c_VectorXs map(int n_iterations)
# Step-by-step inference methods.
c_MatrixXf startInference() const
void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const
^
------------------------------------------------------------
pydensecrf/densecrf.pxd:66:60: 'c_MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
# Step-by-step inference methods.
c_MatrixXf startInference() const
void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const
#double gradient( int n_iterations, const ObjectiveFunction & objective, c_VectorXf * unary_grad, c_VectorXf * lbl_cmp_grad, c_VectorXf * kernel_grad=NULL ) const;
double klDivergence(const c_MatrixXf &Q) const
^
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pydensecrf/densecrf.pxd:69:34: 'c_MatrixXf' is not a type identifier
warning: pydensecrf/densecrf.pyx:20:4: Unreachable code
Error compiling Cython file:
------------------------------------------------------------
...
return eigen.MatrixXf().wrap(self._this.inference(niter))
def startInference(self):
return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf()
def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2):
^
------------------------------------------------------------
pydensecrf/densecrf.pyx:97:28: 'MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
return eigen.MatrixXf().wrap(self._this.inference(niter))
def startInference(self):
return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf()
def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2):
^
------------------------------------------------------------
pydensecrf/densecrf.pyx:97:40: 'MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
return eigen.MatrixXf().wrap(self._this.inference(niter))
def startInference(self):
return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf()
def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2):
^
------------------------------------------------------------
pydensecrf/densecrf.pyx:97:55: 'MatrixXf' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf()
def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2):
self._this.stepInference(Q.m, tmp1.m, tmp2.m)
def klDivergence(self, MatrixXf Q):
^
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pydensecrf/densecrf.pyx:100:27: 'MatrixXf' is not a type identifier
Error compiling Cython file:
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...
raise ValueError("Bad shape for pairwise energy (Need (?, {}), got {})".format(self._nvar, (features.shape[0], features.shape[1])))
self._this.addPairwiseEnergy(eigen.c_matrixXf(features), _labelcomp(compat), kernel, normalization)
def setUnary(self, Unary u):
self._this.setUnaryEnergy(u.move())
^
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pydensecrf/densecrf.pyx:78:33: ambiguous overloaded method
Compiling pydensecrf/eigen.pyx because it changed.
Compiling pydensecrf/densecrf.pyx because it changed.
[1/2] Cythonizing pydensecrf/densecrf.pyx
Traceback (most recent call last):
File "/home/vdkhoi/.conda/envs/DiffuMask/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/home/vdkhoi/.conda/envs/DiffuMask/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/home/vdkhoi/.conda/envs/DiffuMask/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
return hook(config_settings)
File "/tmp/pip-build-env-k7kqvt3l/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 355, in get_requires_for_build_wheel
return self._get_build_requires(config_settings, requirements=['wheel'])
File "/tmp/pip-build-env-k7kqvt3l/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 325, in _get_build_requires
self.run_setup()
File "/tmp/pip-build-env-k7kqvt3l/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 507, in run_setup
super(_BuildMetaLegacyBackend, self).run_setup(setup_script=setup_script)
File "/tmp/pip-build-env-k7kqvt3l/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 341, in run_setup
exec(code, locals())
File "<string>", line 13, in <module>
File "/tmp/pip-build-env-k7kqvt3l/overlay/lib/python3.8/site-packages/Cython/Build/Dependencies.py", line 1134, in cythonize
cythonize_one(*args)
File "/tmp/pip-build-env-k7kqvt3l/overlay/lib/python3.8/site-packages/Cython/Build/Dependencies.py", line 1301, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: pydensecrf/densecrf.pyx
[end of output]
When I install git+https://github.com/lucasb-eyer/pydensecrf.git, I have trouble with cython , so I found that I must downgrade to cython==0.29.36 and then install pydensecrf that okay but when i install OpenAI Clip I get likely the same error.
/tmp/pip-build-env-k7kqvt3l/overlay/lib/python3.8/site-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-install-ktjymnfq/pydensecrf_a587772943f6421480fe6eb089f3a216/pydensecrf/densecrf.pxd tree = Parsing.p_module(s, pxd, full_module_name)