Araport11 transcriptome for control

weir12 / DENA

Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.

MIT License

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Araport11 transcriptome for control #16

Closed JBerthelier closed 1 year ago

JBerthelier commented 1 year ago

‌Dear DENA team, I am opening issue because the email [liangou@ips.ac.cn] do not works. I got my email back.

I would like to know wich Araport11 version you used in the DENA paper ? Could you send me the link where you dowload it ?

I would like to repeat your analyses of m6A calling from your Col-0 data and compare with your output in Suplementary data to see if my installation and running of DENA is correct.

Best wiches,

Jeremy

weir12 commented 1 year ago

Here is TAIR11 download link https://www.arabidopsis.org/download_files/Genes/Araport11_genome_release/Araport11_blastsets/Araport11_cdna_20220914.gz liangou@ips.ac.cn Email has been deprecated because my employment status has changed

JBerthelier commented 1 year ago

I forgot to replied, but thanks it was useful !!