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weizhouUMICH / SAIGE

GNU Lesser General Public License v3.0
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SAIGE Step 1 error line 12: 6843 Killed #309

Closed Melb1 closed 2 years ago

Melb1 commented 3 years ago

Hi SAIGE team

I am running SAIGE GRM on 65K samples and getting this error

SAIGE line 12: 6843 Killed

weizhouUMICH commented 2 years ago

Sorry fo the late reply! We have just released a new version 1.0.0. It has substantial computational efficiency improvements for both Step 1 and Step 2 for single-variant and set-based tests and clearer log output. We have created a new program github page https://github.com/saigegit/SAIGE with the documentation provided https://saigegit.github.io/SAIGE-doc/ The program will be maintained by multiple SAIGE developers there. The docker image has been updated. Please feel free to try the version 1.0.0 and report issues if any.

Thanks! Wei