Segmentation fault (core dumped)

weizhouUMICH / SAIGE

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Segmentation fault (core dumped) #324

Closed psnehal closed 2 years ago

psnehal commented 3 years ago

Sometimes my step 1 is failing when I run the saige on Centos 7 system . I am getting "159336 Segmentation fault (core dumped)" error for that job. Out of 4 times I tried to run the job, it failed 2 times and was successful 2 times. Does anyone come across this problem?

mferreiradasilva commented 3 years ago

This is probably an installation problem.

Follow this guide: https://github.com/weizhouUMICH/SAIGE/issues/118

It worked for me.

matuskosut commented 3 years ago

@mferreiradasilva @psnehal if you are using conda, you might as well install directly r-saige:

conda install -c conda-forge -c bioconda r-saige

Feel free to tag me if you spot some issues with this conda package.

Mentioned also here: https://github.com/weizhouUMICH/SAIGE/issues/272