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weizhouUMICH / SAIGE

GNU Lesser General Public License v3.0
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update and simplify conda environment steps #328

Open matuskosut opened 3 years ago

matuskosut commented 3 years ago

It has been some time since R was updated to version 4.0 and packages on conda support it. Saige is also built with R 4.0 support in conda packages https://anaconda.org/bioconda/r-saige so I don't expect any problems when running build.

Most of those packages are actually available in conda-forge (including cget). It is better to use that channel where possible, than to combine too many channels as to avoid cross-channel dependency conflicts.

Conda environment steps were last updated in Oct 2019: https://github.com/weizhouUMICH/SAIGE/issues/118

https://github.com/weizhouUMICH/SAIGE/issues/340

matuskosut commented 3 years ago

Hi @weizhouUMICH , I also was proposing this one relating to conda. 😊

luyang-ai4med commented 1 year ago

This update solves several issues of my installation. Thank you @matuskosut and it should be merged.