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weizhouUMICH / SAIGE

GNU Lesser General Public License v3.0
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Install error-Failed to build package statgen/savvy #355

Closed ZD-Mei closed 2 years ago

ZD-Mei commented 3 years ago

I tried to install SAIGE, using the both 2 method: 1, devtools::install_github("weizhouUMICH/SAIGE"); or 2, src_branch=master repo_src_url=https://github.com/weizhouUMICH/SAIGE git clone --depth 1 -b $src_branch $repo_src_url R CMD INSTALL --library=path_to_final_SAIGE_library SAIGE

but got the error: Failed to build package statgen/savvy ERROR: configuration failed for package ‘SAIGE’ ─ removing ‘/tmp/Rtmpm1heSP/Rinstd456f00687f/SAIGE’

ERROR: package installation failed Error: Failed to install 'SAIGE' from GitHub: System command error

lanxianmei commented 2 years ago

Hello, have you solved the problem? I have the same problem.

weizhouUMICH commented 2 years ago

Sorry for the late reply! We have just released a new version 1.0.0. It has substantial computational efficiency improvements for both Step 1 and Step 2 for single-variant and set-based tests and clearer log output. We have created a new program github page https://github.com/saigegit/SAIGE with the documentation provided https://saigegit.github.io/SAIGE-doc/ The program will be maintained by multiple SAIGE developers there. The docker image has been updated. Please feel free to try the version 1.0.0 and report issues if any.

Thanks! Wei