Closed complexgenome closed 3 years ago
Dear @weizhouUMICH - can you please assist?
Found the solution. I was using GRM file (step0) instead of the sigma-sparse file output generated while fitting the null model.
I have the same question with you,can you please tell me more details to solve this error? thanks a lot
Hello there,
I use command to run group based gene association using saige
Messages:
Error
Before running this, I create kinship and fit null model
The phenotype has missing value for some individuals. Out of 7234, 7127 has phenotype. That makes sense when the number doesn't match.
I was able to run the single-marker test without any issues using same code, same phenotype except group-based file.
@weizhouUMICH can you please assist?