I want to perform single-variant association tests, and I have one file containing data on multiple binary phenotypes (one column for each phenotype, with 1/0/NA). I know that I have to run step1 for each phenotype (specified by phenoCol) and that it has to be 1 and 0 in the phenotype column. But I want to know if there can be NAs as well?
If there cannot be NAs, I guess I will have to make one phenotype file for each phenotype, to only have 1 and 0 in the column.
Hi,
I want to perform single-variant association tests, and I have one file containing data on multiple binary phenotypes (one column for each phenotype, with 1/0/NA). I know that I have to run step1 for each phenotype (specified by phenoCol) and that it has to be 1 and 0 in the phenotype column. But I want to know if there can be NAs as well?
If there cannot be NAs, I guess I will have to make one phenotype file for each phenotype, to only have 1 and 0 in the column.