weizhouUMICH / SAIGE

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Why are some parameters invalid when fitting the step1 model of set-based test? #424

Closed xuqian-007 closed 1 year ago

xuqian-007 commented 1 year ago

Hi, everyone I am new to bioinformatics and I am trying to run the example data of set-based step1, but it prompts "qCovarColList" and "isCateVarianceRatio" are invalid, and I wonder if this is relevant to the version of SAIGE. I was installing SAIGE using the following code: conda create -n saige -c conda-forge -c bioconda r-base=4.0 r-saige=0.45.0 Could you please let me know you suggestions to help solve the problem? Many thanks!