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wejlab / MetaScope

An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
GNU General Public License v3.0
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taxonomy table not found #17

Closed tbazilegith closed 2 years ago

tbazilegith commented 2 years ago

Hello Aubrey / Evan, I ran onto this issue when downloading target library for Metasope. Any thought about the cause?

bacterium_rsq <- MetaScope::download_refseq(taxon="bacteria", reference = TRUE, representative = TRUE, compress = TRUE) Finding bacteria bacteria is a superkingdom under the Bacteria Superkingdom Loading the refseq table for bacteria Error in get_children(taxon, rank_input, data = taxonomy_table) : object 'taxonomy_table' not found Thanks, TJ

aubreyodom commented 2 years ago

Thanks for bringing this to my attention! I'll post an update to the code soon.

aubreyodom commented 2 years ago

Hi @tbazilegith , It should be working now. Please let me know if you encounter further issues.