search

wejlab / MetaScope

An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
GNU General Public License v3.0
16 stars 7 forks source link

Setting .cache folder #20

Closed susheelbhanu closed 1 year ago

susheelbhanu commented 1 year ago

Hi,

I'm trying to download the refseq files for bacteria, but keep getting files put into the .cache folder where Metascope is installed. Is it possible to specify a custom location for the cache?

Thank you, Susheel

susheelbhanu commented 1 year ago

I just realised that turning off the cache in the below command seems to do the trick.

download_refseq('bacteria', reference = TRUE, representative = TRUE,
                out_dir = "/hdd0/susbus/databases/metascope", compress = TRUE, patho_out = FALSE,
                caching = FALSE, quiet = FALSE)