Fix devtools:check() run time too long issue

[jasonzhao0307]

This is the output most related to this issue: ✔ checking examples (11h 30m 5.8s) Examples with CPU or elapsed time > 5s user system elapsed download_refseq 446.578 41.465 28160.349 find_biomarker 68.008 4.521 14.061 mk_subread_index 16.856 3.910 4071.676 bam_reheader_R 12.498 4.498 54.994 merge_bam_files 12.829 3.952 5686.170 combined_header 12.587 4.090 52.811 filter_unmapped_reads 8.556 3.041 3253.693 animalcules_id 7.601 2.345 47.532 align_target 7.579 2.293 47.511

[jasonzhao0307]

To fix: we could just add a \dontrun{} e.g:

' @examples

' \dontrun{

' XXXXXX

' }

[definitelysean]

@jasonzhao0307 Just poking my head in here to say that you should favor not using dontrun if you can get away with it; the Bioconductor curators will give you a hard time about it. Another alternative is to include a very small dataset with your package for which the different steps will run very quickly.

[jasonzhao0307]

@definitelysean Saved my day!! Thank you Sean :)

[wevanjohnson]

Note, this is probably my example and I will be making it better soon. Let’s talk next time I am in, there probably is a way to make these examples less complex.

On Jan 25, 2019, at 10:49 AM, Yue Zhao notifications@github.com wrote:

@definitelysean https://github.com/definitelysean Saved my day!! Thank you Sean :)

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