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wejlab / animalcules

R shiny app for interactive microbiome analysis
https://wejlab.github.io/animalcules-docs/
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Modify differential abundance analysis #29

Closed jasonzhao0307 closed 5 years ago

jasonzhao0307 commented 5 years ago
  1. Show original p-values in DE result
  2. The denominator in the class prevalence should be the total number of samples in that class
  3. Debug the covariates in deseq2.
  4. Debug two levels comparison.
  5. Deseq2 do multiple levels
jasonzhao0307 commented 5 years ago

In the new design, if the target variable is multi-class, we will show all pair-wise comparison results. Also, new design will support the continuous variable target