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wejlab / animalcules

R shiny app for interactive microbiome analysis
https://wejlab.github.io/animalcules-docs/
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BIOM file upload brings out error #53

Closed IdanBanson closed 9 months ago

IdanBanson commented 10 months ago

I finally managed to create a .biom file from my PacBio Dataset using their QIIME2 workflow. However when I try uploading it into animalcules it brings out this error (attached image).

Screenshot 2023-10-11 165746
IdanBanson commented 10 months ago

I finally managed to create a .biom file from my PacBio Dataset using their QIIME2 workflow. However when I try uploading it into animalcules it brings out this error (attached image). Screenshot 2023-10-11 165746

PS: This is the error shown in the R terminal.

Warning in strsplit(conditionMessage(e), "\n") : unable to translate 'lexical error: invalid char in json text.

<89>HDF  (right here) ------^ ' to a wide string Warning in strsplit(conditionMessage(e), "\n") : input string 1 is invalid
IdanBanson commented 9 months ago

So I managed to fix this... Though turns out it wasn't really an issue. I just didn't have the metadata added to my .biom file. It finally worked after adding it to it using the biom add-metadata -h function in qiime2. More information can be found on .