mvfki
commented
5 months ago Hi
I just made an update trying to fix the compilation error.
We apologize that we have been developing the package totally on Mac and Linux based environments and rarely tested it on a windows machine. I could see the same error on my alt windows laptop, too. Now it builds fine on my end. Would you please try again and see if it works now?
Yichen
ZHOUDI0929
I ran into some problems when installing this package. At first, I used R4.3.3 (Rtools 43) to install this package, and an error occurred. To solve the installation problem, I was on R4.2.0 (Rtools 42) and set up a new environment using renv and tried again, but the problem was still not solved. Below is the error content, If additional information is needed I will be happy to provide it.
wilcox.cpp: In function 'std::__cxx11::list cpp_in_place_rank_mean(arma::vec&, int, int)':
wilcox.cpp:18:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
18 | for (size_t i = idx_begin; i <= idx_end; i++) {
|
^~~~ g++ -std=gnu++11 -shared -s -static-libgcc -o cytosignal.dll tmp.def RcppExports.o mat_exp.o utils_velo.o wilcox.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LC:/PROGRA~1/R/R-42~1.0/bin/x64 -lR C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: mat_exp.o:matexp.cpp:(.text.hot+0x1cc): undefined reference to `dgemm' C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: mat_exp.o:matexp.cpp:(.text.hot+0x2af): undefined reference to `dgemv' C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: mat_exp.o:matexp.cpp:(.text.hot+0x64e): undefined reference to `dsyrk' collect2.exe: error: ld returned 1 exit status no DLL was created ERROR: compilation failed for package 'cytosignal'Matrix products: default
locale: [1] LC_COLLATE=Chinese (Simplified)_China.utf8 [2] LC_CTYPE=Chinese (Simplified)_China.utf8
[3] LC_MONETARY=Chinese (Simplified)_China.utf8 [4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.utf8
attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] Rcpp_1.0.12 compiler_4.2.0 later_1.3.2 urlchecker_1.0.1 [5] profvis_0.3.8 remotes_2.5.0 tools_4.2.0 digest_0.6.35
[9] pkgbuild_1.4.4 pkgload_1.3.4 memoise_2.0.1 lifecycle_1.0.4
[13] rlang_1.1.3 shiny_1.8.1 cli_3.6.2 rstudioapi_0.16.0 [17] curl_5.2.1 xfun_0.43 fastmap_1.1.1 stringr_1.5.1
[21] desc_1.4.3 fs_1.6.3 htmlwidgets_1.6.4 vctrs_0.6.5
[25] devtools_2.4.5 glue_1.7.0 R6_2.5.1 processx_3.8.4
[29] sessioninfo_1.2.2 purrr_1.0.2 callr_3.7.6 magrittr_2.0.3
[33] ps_1.7.6 promises_1.2.1 ellipsis_0.3.2 htmltools_0.5.8
[37] usethis_2.2.3 mime_0.12 xtable_1.8-4 httpuv_1.6.15
[41] tinytex_0.50 stringi_1.8.3 miniUI_0.1.1.1 cachem_1.0.8