Error in Seurat/Liger integration

welch-lab / liger

R package for integrating and analyzing multiple single-cell datasets

GNU General Public License v3.0

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Error in Seurat/Liger integration #117

Closed pdesouza27 closed 5 years ago

pdesouza27 commented 5 years ago

I am using the Liger docker on a cluster node, and whenever I try to use the function GetAssayData on a Liger or Seurat object (or any function that utilizes GetAssayData such as seuratToLiger) I get the error:

Error in GetAssayData(nbm, slot = "counts") : object 'to.return' not found

I'm wondering if there may be an error with returning the object?

pdesouza27 commented 5 years ago

Sorry, I didn't know I had to also install Seurat in the Docker, it's working now!