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welch-lab / liger

R package for integrating and analyzing multiple single-cell datasets
GNU General Public License v3.0
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Is there python version for Liger #219

Closed HelloWorldLTY closed 3 years ago

HelloWorldLTY commented 3 years ago

It seems that there is no python API for Liger, is there anyone can tell me where I can find a similar use? Thanks

skpalan commented 3 years ago

Hi, we definitely understand the needs of python users. In this stage, the python version of LIGER is still under development. It will be released in near future. Thank you!

HelloWorldLTY commented 3 years ago

OK, sad. In addition, could you please give me some hints about how to design the API from python data to R data? Thanks

skpalan commented 3 years ago

LIGER takes two kinds of data as inputs, gene by cell matrices (both sparse and dense) and hdf5 files. Regradless of what python data structures you are using, you can always convert them into these two formats and then pass to R and LIGER.

HelloWorldLTY commented 3 years ago

Could I input the np.array file to liger model? Do you have any tutorial documents related to this part? Thanks a lot. I've been struggling with this problem for a long time. Thanks a lot.