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welch-lab / liger

R package for integrating and analyzing multiple single-cell datasets
GNU General Public License v3.0
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Filtering Out Empties, Multiplets, Broken Cells etc #255

Closed robin1-2 closed 2 years ago

robin1-2 commented 2 years ago

Hi,

I am new on Liger. How can we filter out low quality cells before normalization? (As in Seurat's subsetting code: nFeature_RNA > 200 & nFeature_RNA < 2500 & percent.mt < 5)

Thanks