search

welch-lab / liger

R package for integrating and analyzing multiple single-cell datasets
GNU General Public License v3.0
380 stars 78 forks source link

Unable to use unshared arguments using LIGER v1.0.0.0 #273

Closed simeonhebrew closed 1 year ago

simeonhebrew commented 1 year ago

Hello,

I am unable to use unshared features arguments from LIGER v1.0.0. I would appreciate any leads on what the problem would be.

liger_genes <- selectGenes(liger_shared_norm, var.thresh = 0.1, datasets.use =1 , unshared = TRUE, unshared.datasets = list(2), unshared.thresh= 0.2) Error in selectGenes(liger_shared_norm, var.thresh = 0.1, datasets.use = 1, : unused arguments (unshared = TRUE, unshared.datasets = list(2), unshared.thresh = 0.2)```

cgao90 commented 1 year ago

Hi,

Did you install LIGER from CRAN? To implement UINMF, you will have to install from github, which has incorporated the latest updates on LIGER.