search

welch-lab / liger

R package for integrating and analyzing multiple single-cell datasets
GNU General Public License v3.0
392 stars 78 forks source link

log transform data first? #281

Closed jessegmeyerlab closed 1 year ago

jessegmeyerlab commented 1 year ago

Do we need to log transform our data before we run the pipeline?

jw156605 commented 1 year ago

No, we do not log data. You can if you want--it doesn't make much difference in the examples we've tried.

From: jessegmeyerlab @.> Sent: Tuesday, January 3, 2023 11:43:23 AM To: welch-lab/liger @.> Cc: Subscribed @.***> Subject: [welch-lab/liger] log transform data first? (Issue #281)

External Email - Use Caution

Do we need to log transform our data before we run the pipeline?

— Reply to this email directly, view it on GitHubhttps://github.com/welch-lab/liger/issues/281, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AAS2HVMCPVV2ANZUGL3ON5LWQRJKXANCNFSM6AAAAAATP4ANV4. You are receiving this because you are subscribed to this thread.Message ID: @.***>

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues