universvm
commented
3 years ago Hi there, could you try to place the "2pgf.fasta" file in the same folder as this repo?
Essentially run this:
python run_fold.py --workers 1 --num_models 1 --input_file 2pgf.fastaApologies for the delay, I'm currently working on my Master's dissertation and have not seen this earlier.
Hello! I am encountering a problem as below, —————————————————————————————————————————————————— python run_fold.py --workers 1 --num_models 1 --input_file ../Input_Seq/2pgf.fasta Starting 2PGF_1|ChainA|adenosine_deaminase|Plasmodiumvivax(5855) sh: 1: ./msa2.bsh: Permission denied multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/home/teslein/miniconda3/envs/fold/lib/python3.7/multiprocessing/pool.py", line 121, in worker result = (True, func(*args, **kwds)) File "/home/teslein/miniconda3/envs/fold/lib/python3.7/multiprocessing/pool.py", line 47, in starmapstar return list(itertools.starmap(args[0], args[1])) File "run_fold.py", line 114, in run_model a3m_lines = "".join(open(f"{jobname}.a3m", "r").readlines()) FileNotFoundError: [Errno 2] No such file or directory: '2PGF_1ChainAadenosine_deaminasePlasmodium_vivax_5855.a3m' """
The above exception was the direct cause of the following exception:
Traceback (most recent call last): File "run_fold.py", line 304, in
main(params)
File "run_fold.py", line 287, in main
list(predicted_sequence_dict.keys()),
File "/home/teslein/miniconda3/envs/fold/lib/python3.7/multiprocessing/pool.py", line 276, in starmap
return self._map_async(func, iterable, starmapstar, chunksize).get()
File "/home/teslein/miniconda3/envs/fold/lib/python3.7/multiprocessing/pool.py", line 657, in get
raise self._value
FileNotFoundError: [Errno 2] No such file or directory: '2PGF_1ChainAadenosine_deaminasePlasmodium_vivax_5855.a3m'
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Hope for a resolution !